Detailed information of SNP:
|
SNP ID:
sf1204313437(Gbrowse)
Chromosome: chr12 Position: 4313437 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1404 | 94.73% | 5.27% |
| All Indica | 784 | 92.86% | 7.14% |
| All Japonica | 497 | 96.78% | 3.22% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 98.92% | 1.08% |
| Indica II | 205 | 83.41% | 16.59% |
| Indica Intermediate | 207 | 91.30% | 8.70% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204313437 | C->T | LOC_Os12g08510(LOC_Os12g08510.1) | Non-Synonymous SNP |