Detailed information of SNP:
|
SNP ID:
sf1204318889(Gbrowse)
Chromosome: chr12 Position: 4318889 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1310 | 81.45% | 18.55% |
| All Indica | 700 | 68.29% | 31.71% |
| All Japonica | 493 | 97.57% | 2.43% |
| Aus | 66 | 92.42% | 7.58% |
| Indica I | 334 | 60.48% | 39.52% |
| Indica II | 181 | 79.01% | 20.99% |
| Indica Intermediate | 185 | 71.89% | 28.11% |
| Temperate Japonica | 333 | 98.80% | 1.20% |
| Tropical Japonica | 93 | 95.70% | 4.30% |
| Japonica Intermediate | 67 | 94.03% | 5.97% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 37 | 89.19% | 10.81% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204318889 | G->A | LOC_Os12g08510(LOC_Os12g08510.1) | Non-Synonymous SNP |