Detailed information of SNP:
|
SNP ID:
sf1204319169(Gbrowse)
Chromosome: chr12 Position: 4319169 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1380 | 61.45% | 38.55% |
| All Indica | 779 | 88.06% | 11.94% |
| All Japonica | 480 | 18.75% | 81.25% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 364 | 84.34% | 15.66% |
| Indica II | 207 | 93.72% | 6.28% |
| Indica Intermediate | 208 | 88.94% | 11.06% |
| Temperate Japonica | 330 | 8.79% | 91.21% |
| Tropical Japonica | 85 | 43.53% | 56.47% |
| Japonica Intermediate | 65 | 36.92% | 63.08% |
| Group VI/Aromatic | 14 | 64.29% | 35.71% |
| Intermediate | 40 | 67.50% | 32.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204319169 | T->C | LOC_Os12g08510(LOC_Os12g08510.1) | Non-Synonymous SNP |