Detailed information of SNP:
|
SNP ID:
sf1204319865(Gbrowse)
Chromosome: chr12 Position: 4319865 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 95.94% | 4.06% |
| All Indica | 764 | 93.46% | 6.54% |
| All Japonica | 495 | 100.00% | 0.00% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 362 | 92.27% | 7.73% |
| Indica II | 202 | 93.56% | 6.44% |
| Indica Intermediate | 200 | 95.50% | 4.50% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 90.00% | 10.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204319865 | C->T | INTERGENIC | None |