Detailed information of SNP:
|
SNP ID:
sf1204322445(Gbrowse)
Chromosome: chr12 Position: 4322445 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1404 | 58.97% | 41.03% |
| All Indica | 792 | 32.32% | 67.68% |
| All Japonica | 494 | 95.75% | 4.25% |
| Aus | 66 | 86.36% | 13.64% |
| Indica I | 374 | 7.49% | 92.51% |
| Indica II | 209 | 51.20% | 48.80% |
| Indica Intermediate | 209 | 57.89% | 42.11% |
| Temperate Japonica | 334 | 98.20% | 1.80% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 74.36% | 25.64% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204322445 | A->C | LOC_Os12g08520(LOC_Os12g08520.1) | INTRON |