Detailed information of SNP:
|
SNP ID:
sf1204322638(Gbrowse)
Chromosome: chr12 Position: 4322638 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1405 | 55.30% | 44.70% |
| All Indica | 792 | 29.42% | 70.58% |
| All Japonica | 494 | 94.53% | 5.47% |
| Aus | 66 | 59.09% | 40.91% |
| Indica I | 374 | 4.55% | 95.45% |
| Indica II | 209 | 47.85% | 52.15% |
| Indica Intermediate | 209 | 55.50% | 44.50% |
| Temperate Japonica | 334 | 97.60% | 2.40% |
| Tropical Japonica | 92 | 86.96% | 13.04% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 39 | 64.10% | 35.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204322638 | T->C | LOC_Os12g08520(LOC_Os12g08520.1) | Non-Synonymous SNP |