Detailed information of SNP:
|
SNP ID:
sf1204323424(Gbrowse)
Chromosome: chr12 Position: 4323424 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1401 | 59.39% | 40.61% |
| All Indica | 785 | 32.87% | 67.13% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 373 | 8.04% | 91.96% |
| Indica II | 205 | 50.73% | 49.27% |
| Indica Intermediate | 207 | 59.90% | 40.10% |
| Temperate Japonica | 335 | 98.21% | 1.79% |
| Tropical Japonica | 93 | 89.25% | 10.75% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 70.73% | 29.27% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204323424 | T->A | INTERGENIC | None |