Detailed information of SNP:
|
SNP ID:
sf1204323607(Gbrowse)
Chromosome: chr12 Position: 4323607 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1395 | 59.86% | 40.14% |
| All Indica | 778 | 33.80% | 66.20% |
| All Japonica | 496 | 94.96% | 5.04% |
| Aus | 67 | 86.57% | 13.43% |
| Indica I | 368 | 13.32% | 86.68% |
| Indica II | 205 | 49.76% | 50.24% |
| Indica Intermediate | 205 | 54.63% | 45.37% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 93 | 88.17% | 11.83% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 72.50% | 27.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204323607 | G->A | LOC_Os12g08530(LOC_Os12g08530.1) | Non-Synonymous SNP |