Detailed information of SNP:
|
SNP ID:
sf1204327772(Gbrowse)
Chromosome: chr12 Position: 4327772 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 95.74% | 4.26% |
| All Indica | 791 | 94.06% | 5.94% |
| All Japonica | 496 | 98.59% | 1.41% |
| Aus | 67 | 94.03% | 5.97% |
| Indica I | 372 | 94.09% | 5.91% |
| Indica II | 209 | 95.22% | 4.78% |
| Indica Intermediate | 210 | 92.86% | 7.14% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 67 | 97.01% | 2.99% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204327772 | T->C | INTERGENIC | None |