Detailed information of SNP:
|
SNP ID:
sf1204335536(Gbrowse)
Chromosome: chr12 Position: 4335536 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1409 | 96.10% | 3.90% |
| All Indica | 791 | 95.83% | 4.17% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 369 | 97.83% | 2.17% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 94.26% | 5.74% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 90.43% | 9.57% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204335536 | A->G | LOC_Os12g08550(LOC_Os12g08550.1) | UTR_3_PRIME |