Detailed information of SNP:
|
SNP ID:
sf1204355335(Gbrowse)
Chromosome: chr12 Position: 4355335 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1399 | 96.35% | 3.65% |
| All Indica | 785 | 95.41% | 4.59% |
| All Japonica | 492 | 97.97% | 2.03% |
| Aus | 66 | 95.45% | 4.55% |
| Indica I | 372 | 97.31% | 2.69% |
| Indica II | 208 | 96.15% | 3.85% |
| Indica Intermediate | 205 | 91.22% | 8.78% |
| Temperate Japonica | 332 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204355335 | C->T | LOC_Os12g08580(LOC_Os12g08580.1) | Synonymous |