Detailed information of SNP:
|
SNP ID:
sf1204374846(Gbrowse)
Chromosome: chr12 Position: 4374846 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1329 | 91.20% | 8.80% |
| All Indica | 725 | 85.10% | 14.90% |
| All Japonica | 497 | 99.20% | 0.80% |
| Aus | 55 | 96.36% | 3.64% |
| Indica I | 339 | 82.60% | 17.40% |
| Indica II | 195 | 91.79% | 8.21% |
| Indica Intermediate | 191 | 82.72% | 17.28% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 39 | 92.31% | 7.69% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204374846 | G->A | INTERGENIC | None |