Detailed information of SNP:
|
SNP ID:
sf1204377176(Gbrowse)
Chromosome: chr12 Position: 4377176 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 96.53% | 3.47% |
| All Indica | 777 | 95.75% | 4.25% |
| All Japonica | 487 | 98.97% | 1.03% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 365 | 97.26% | 2.74% |
| Indica II | 210 | 92.86% | 7.14% |
| Indica Intermediate | 202 | 96.04% | 3.96% |
| Temperate Japonica | 334 | 99.70% | 0.30% |
| Tropical Japonica | 86 | 96.51% | 3.49% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 78.57% | 21.43% |
| Intermediate | 39 | 87.18% | 12.82% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204377176 | C->T | LOC_Os12g08610(LOC_Os12g08610.1) | Non-Synonymous SNP |