Detailed information of SNP:
|
SNP ID:
sf1204377226(Gbrowse)
Chromosome: chr12 Position: 4377226 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1372 | 94.46% | 5.54% |
| All Indica | 775 | 93.68% | 6.32% |
| All Japonica | 481 | 97.71% | 2.29% |
| Aus | 63 | 77.78% | 22.22% |
| Indica I | 362 | 92.54% | 7.46% |
| Indica II | 207 | 98.07% | 1.93% |
| Indica Intermediate | 206 | 91.26% | 8.74% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 78 | 88.46% | 11.54% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204377226 | C->T | LOC_Os12g08610(LOC_Os12g08610.1) | SNPs that introduce stop codons |