Detailed information of SNP:
|
SNP ID:
sf1204378447(Gbrowse)
Chromosome: chr12 Position: 4378447 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.50% | 3.50% |
| All Indica | 790 | 96.84% | 3.16% |
| All Japonica | 491 | 96.33% | 3.67% |
| Aus | 65 | 95.38% | 4.62% |
| Indica I | 369 | 95.12% | 4.88% |
| Indica II | 212 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.13% | 2.87% |
| Temperate Japonica | 334 | 100.00% | 0.00% |
| Tropical Japonica | 90 | 81.11% | 18.89% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 92.50% | 7.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204378447 | C->T | LOC_Os12g08620(LOC_Os12g08620.1) | Non-Synonymous SNP |