Detailed information of SNP:



SNP ID: sf1204379393(Gbrowse)

Chromosome: chr12

Position: 4379393
Major allele: G

Minor allele: A

Reference allele: A

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1360 55.88% 44.12%
All Indica753 80.88% 19.12%
All Japonica488 16.19% 83.81%
Aus64 64.06% 35.94%
Indica I358 87.15% 12.85%
Indica II196 67.35% 32.65%
Indica Intermediate199 82.91% 17.09%
Temperate Japonica331 4.23% 95.77%
Tropical Japonica91 59.34% 40.66%
Japonica Intermediate66 16.67% 83.33%
Group VI/Aromatic14 35.71% 64.29%
Intermediate41 63.41% 36.59%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1204379393 A->G LOC_Os12g08620(LOC_Os12g08620.1) Non-Synonymous SNP