Detailed information of SNP:
|
SNP ID:
sf1204379393(Gbrowse)
Chromosome: chr12 Position: 4379393 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1360 | 55.88% | 44.12% |
| All Indica | 753 | 80.88% | 19.12% |
| All Japonica | 488 | 16.19% | 83.81% |
| Aus | 64 | 64.06% | 35.94% |
| Indica I | 358 | 87.15% | 12.85% |
| Indica II | 196 | 67.35% | 32.65% |
| Indica Intermediate | 199 | 82.91% | 17.09% |
| Temperate Japonica | 331 | 4.23% | 95.77% |
| Tropical Japonica | 91 | 59.34% | 40.66% |
| Japonica Intermediate | 66 | 16.67% | 83.33% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204379393 | A->G | LOC_Os12g08620(LOC_Os12g08620.1) | Non-Synonymous SNP |