Detailed information of SNP:
|
SNP ID:
sf1204381175(Gbrowse)
Chromosome: chr12 Position: 4381175 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1339 | 52.73% | 47.27% |
| All Indica | 730 | 31.10% | 68.90% |
| All Japonica | 491 | 85.95% | 14.05% |
| Aus | 65 | 44.62% | 55.38% |
| Indica I | 332 | 28.92% | 71.08% |
| Indica II | 198 | 37.88% | 62.12% |
| Indica Intermediate | 200 | 28.00% | 72.00% |
| Temperate Japonica | 333 | 96.70% | 3.30% |
| Tropical Japonica | 92 | 44.57% | 55.43% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 71.43% | 28.57% |
| Intermediate | 39 | 46.15% | 53.85% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204381175 | A->G | LOC_Os12g08620(LOC_Os12g08620.1) | INTRON |