Detailed information of SNP:
|
SNP ID:
sf1204381805(Gbrowse)
Chromosome: chr12 Position: 4381805 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1384 | 59.25% | 40.75% |
| All Indica | 776 | 84.79% | 15.21% |
| All Japonica | 490 | 16.53% | 83.47% |
| Aus | 65 | 70.77% | 29.23% |
| Indica I | 363 | 86.50% | 13.50% |
| Indica II | 206 | 82.04% | 17.96% |
| Indica Intermediate | 207 | 84.54% | 15.46% |
| Temperate Japonica | 331 | 3.32% | 96.68% |
| Tropical Japonica | 92 | 58.70% | 41.30% |
| Japonica Intermediate | 67 | 23.88% | 76.12% |
| Group VI/Aromatic | 12 | 66.67% | 33.33% |
| Intermediate | 41 | 65.85% | 34.15% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204381805 | T->C | LOC_Os12g08620(LOC_Os12g08620.1) | Synonymous |