Detailed information of SNP:
|
SNP ID:
sf1204384795(Gbrowse)
Chromosome: chr12 Position: 4384795 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1323 | 60.70% | 39.30% |
| All Indica | 717 | 43.10% | 56.90% |
| All Japonica | 488 | 89.75% | 10.25% |
| Aus | 65 | 36.92% | 63.08% |
| Indica I | 331 | 45.02% | 54.98% |
| Indica II | 195 | 43.08% | 56.92% |
| Indica Intermediate | 191 | 39.79% | 60.21% |
| Temperate Japonica | 335 | 97.91% | 2.09% |
| Tropical Japonica | 88 | 59.09% | 40.91% |
| Japonica Intermediate | 65 | 89.23% | 10.77% |
| Group VI/Aromatic | 13 | 84.62% | 15.38% |
| Intermediate | 40 | 52.50% | 47.50% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204384795 | A->G | LOC_Os12g08630(LOC_Os12g08630.1) | INTRON |