Detailed information of SNP:
|
SNP ID:
sf1204391933(Gbrowse)
Chromosome: chr12 Position: 4391933 |
Major allele:
A
Minor allele: C Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1400 | 96.71% | 3.29% |
| All Indica | 787 | 96.06% | 3.94% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 61 | 85.25% | 14.75% |
| Indica I | 368 | 96.20% | 3.80% |
| Indica II | 210 | 94.29% | 5.71% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 87.80% | 12.20% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204391933 | A->C | INTERGENIC | None |