Detailed information of SNP:
|
SNP ID:
sf1204396853(Gbrowse)
Chromosome: chr12 Position: 4396853 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 70.66% | 29.34% |
| All Indica | 798 | 81.95% | 18.05% |
| All Japonica | 497 | 58.55% | 41.45% |
| Aus | 67 | 47.76% | 52.24% |
| Indica I | 375 | 90.93% | 9.07% |
| Indica II | 212 | 72.17% | 27.83% |
| Indica Intermediate | 211 | 75.83% | 24.17% |
| Temperate Japonica | 335 | 77.01% | 22.99% |
| Tropical Japonica | 94 | 22.34% | 77.66% |
| Japonica Intermediate | 68 | 17.65% | 82.35% |
| Group VI/Aromatic | 14 | 35.71% | 64.29% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204396853 | T->G | LOC_Os12g08670(LOC_Os12g08670.1) | Non-Synonymous SNP |