Detailed information of SNP:
|
SNP ID:
sf1204417702(Gbrowse)
Chromosome: chr12 Position: 4417702 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1305 | 97.85% | 2.15% |
| All Indica | 779 | 97.30% | 2.70% |
| All Japonica | 417 | 98.80% | 1.20% |
| Aus | 66 | 98.48% | 1.52% |
| Indica I | 375 | 98.67% | 1.33% |
| Indica II | 196 | 92.86% | 7.14% |
| Indica Intermediate | 208 | 99.04% | 0.96% |
| Temperate Japonica | 309 | 99.68% | 0.32% |
| Tropical Japonica | 64 | 100.00% | 0.00% |
| Japonica Intermediate | 44 | 90.91% | 9.09% |
| Group VI/Aromatic | 7 | 100.00% | 0.00% |
| Intermediate | 36 | 97.22% | 2.78% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204417702 | C->T | INTERGENIC | None |