Detailed information of SNP:
|
SNP ID:
sf1204482079(Gbrowse)
Chromosome: chr12 Position: 4482079 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 95.77% | 4.23% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 497 | 98.59% | 1.41% |
| Aus | 67 | 53.73% | 46.27% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 98.58% | 1.42% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204482079 | G->A | INTERGENIC | None |