Detailed information of SNP:
|
SNP ID:
sf1204490815(Gbrowse)
Chromosome: chr12 Position: 4490815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1415 | 50.53% | 49.47% |
| All Indica | 795 | 88.18% | 11.82% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 85.29% | 14.71% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 210 | 83.81% | 16.19% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 30.95% | 69.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204490815 | G->A | INTERGENIC | None |