Detailed information of SNP:
|
SNP ID:
sf1204498174(Gbrowse)
Chromosome: chr12 Position: 4498174 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1323 | 96.45% | 3.55% |
| All Indica | 799 | 99.62% | 0.38% |
| All Japonica | 405 | 91.85% | 8.15% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 375 | 99.47% | 0.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 266 | 96.99% | 3.01% |
| Tropical Japonica | 76 | 72.37% | 27.63% |
| Japonica Intermediate | 63 | 93.65% | 6.35% |
| Group VI/Aromatic | 14 | 42.86% | 57.14% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204498174 | C->T | INTERGENIC | None |