Detailed information of SNP:
|
SNP ID:
sf1204499326(Gbrowse)
Chromosome: chr12 Position: 4499326 |
Major allele:
A
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1416 | 63.14% | 36.86% |
| All Indica | 798 | 98.12% | 1.88% |
| All Japonica | 497 | 9.46% | 90.54% |
| Aus | 65 | 64.62% | 35.38% |
| Indica I | 375 | 98.93% | 1.07% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 210 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204499326 | C->A | LOC_Os12g08760(LOC_Os12g08760.1) | INTRON |