Detailed information of SNP:
|
SNP ID:
sf1204502504(Gbrowse)
Chromosome: chr12 Position: 4502504 |
Major allele:
T
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1417 | 52.36% | 47.64% |
| All Indica | 798 | 90.98% | 9.02% |
| All Japonica | 497 | 0.00% | 100.00% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 88.50% | 11.50% |
| Indica II | 213 | 96.24% | 3.76% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 41 | 39.02% | 60.98% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204502504 | A->T | LOC_Os12g08760(LOC_Os12g08760.1) | UTR_3_PRIME |