Detailed information of SNP:
|
SNP ID:
sf1204503496(Gbrowse)
Chromosome: chr12 Position: 4503496 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 91.97% | 8.03% |
| All Indica | 799 | 94.74% | 5.26% |
| All Japonica | 497 | 88.93% | 11.07% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 375 | 91.47% | 8.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 95.22% | 4.78% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 52.94% | 47.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204503496 | G->T | INTERGENIC | None |