Detailed information of SNP:
|
SNP ID:
sf1204506337(Gbrowse)
Chromosome: chr12 Position: 4506337 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 62.93% | 37.07% |
| All Indica | 799 | 98.00% | 2.00% |
| All Japonica | 497 | 10.06% | 89.94% |
| Aus | 67 | 56.72% | 43.28% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 5.67% | 94.33% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204506337 | A->G | LOC_Os12g08770(LOC_Os12g08770.1) | INTRON |