Detailed information of SNP:
|
SNP ID:
sf1204549057(Gbrowse)
Chromosome: chr12 Position: 4549057 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 92.60% | 7.40% |
| All Indica | 799 | 98.75% | 1.25% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 35.82% | 64.18% |
| Indica I | 375 | 97.60% | 2.40% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204549057 | T->C | INTERGENIC | None |