Detailed information of SNP:
|
SNP ID:
sf1204556427(Gbrowse)
Chromosome: chr12 Position: 4556427 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 93.07% | 6.93% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 66 | 37.88% | 62.12% |
| Indica I | 372 | 98.66% | 1.34% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 95.82% | 4.18% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204556427 | T->C | LOC_Os12g08830(LOC_Os12g08830.2) | INTRON |
| sf1204556427 | T->C | LOC_Os12g08830(LOC_Os12g08830.1) | INTRON |