Detailed information of SNP:
|
SNP ID:
sf1204559563(Gbrowse)
Chromosome: chr12 Position: 4559563 |
Major allele:
T
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1393 | 54.34% | 45.66% |
| All Indica | 774 | 83.20% | 16.80% |
| All Japonica | 497 | 10.46% | 89.54% |
| Aus | 66 | 63.64% | 36.36% |
| Indica I | 359 | 93.31% | 6.69% |
| Indica II | 208 | 63.46% | 36.54% |
| Indica Intermediate | 207 | 85.51% | 14.49% |
| Temperate Japonica | 335 | 4.18% | 95.82% |
| Tropical Japonica | 94 | 14.89% | 85.11% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204559563 | G->T | INTERGENIC | None |