Detailed information of SNP:
|
SNP ID:
sf1204577950(Gbrowse)
Chromosome: chr12 Position: 4577950 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1324 | 97.05% | 2.95% |
| All Indica | 789 | 97.59% | 2.41% |
| All Japonica | 415 | 95.18% | 4.82% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 211 | 97.63% | 2.37% |
| Indica Intermediate | 207 | 96.14% | 3.86% |
| Temperate Japonica | 262 | 92.75% | 7.25% |
| Tropical Japonica | 89 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 98.44% | 1.56% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204577950 | G->A | INTERGENIC | None |