Detailed information of SNP:
|
SNP ID:
sf1204601686(Gbrowse)
Chromosome: chr12 Position: 4601686 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1418 | 52.89% | 47.11% |
| All Indica | 798 | 91.85% | 8.15% |
| All Japonica | 497 | 0.20% | 99.80% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 374 | 88.77% | 11.23% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 91.94% | 8.06% |
| Temperate Japonica | 335 | 0.00% | 100.00% |
| Tropical Japonica | 94 | 1.06% | 98.94% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 38.10% | 61.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204601686 | C->T | INTERGENIC | None |