Detailed information of SNP:
|
SNP ID:
sf1204615984(Gbrowse)
Chromosome: chr12 Position: 4615984 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1411 | 85.97% | 14.03% |
| All Indica | 793 | 86.38% | 13.62% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 65 | 53.85% | 46.15% |
| Indica I | 371 | 80.86% | 19.14% |
| Indica II | 212 | 92.45% | 7.55% |
| Indica Intermediate | 210 | 90.00% | 10.00% |
| Temperate Japonica | 335 | 94.03% | 5.97% |
| Tropical Japonica | 94 | 92.55% | 7.45% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204615984 | A->G | LOC_Os12g08890(LOC_Os12g08890.1) | Non-Synonymous SNP |