Detailed information of SNP:
|
SNP ID:
sf1204621156(Gbrowse)
Chromosome: chr12 Position: 4621156 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1397 | 91.34% | 8.66% |
| All Indica | 792 | 93.06% | 6.94% |
| All Japonica | 492 | 92.48% | 7.52% |
| Aus | 59 | 62.71% | 37.29% |
| Indica I | 370 | 88.11% | 11.89% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 209 | 94.74% | 5.26% |
| Temperate Japonica | 331 | 97.58% | 2.42% |
| Tropical Japonica | 93 | 94.62% | 5.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 13 | 100.00% | 0.00% |
| Intermediate | 41 | 82.93% | 17.07% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204621156 | C->T | INTERGENIC | None |