Detailed information of SNP:
|
SNP ID:
sf1204622053(Gbrowse)
Chromosome: chr12 Position: 4622053 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1393 | 94.62% | 5.38% |
| All Indica | 778 | 97.56% | 2.44% |
| All Japonica | 493 | 92.90% | 7.10% |
| Aus | 66 | 78.79% | 21.21% |
| Indica I | 356 | 96.35% | 3.65% |
| Indica II | 213 | 99.53% | 0.47% |
| Indica Intermediate | 209 | 97.61% | 2.39% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 94 | 95.74% | 4.26% |
| Japonica Intermediate | 67 | 65.67% | 34.33% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204622053 | T->C | INTERGENIC | None |