Detailed information of SNP:
|
SNP ID:
sf1204622395(Gbrowse)
Chromosome: chr12 Position: 4622395 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 85.56% | 14.44% |
| All Indica | 793 | 85.37% | 14.63% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 371 | 79.25% | 20.75% |
| Indica II | 213 | 93.90% | 6.10% |
| Indica Intermediate | 209 | 87.56% | 12.44% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204622395 | T->G | INTERGENIC | None |