Detailed information of SNP:
|
SNP ID:
sf1204622579(Gbrowse)
Chromosome: chr12 Position: 4622579 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 89.78% | 10.22% |
| All Indica | 799 | 92.87% | 7.13% |
| All Japonica | 497 | 90.95% | 9.05% |
| Aus | 67 | 49.25% | 50.75% |
| Indica I | 375 | 87.47% | 12.53% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 95.52% | 4.48% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 68 | 64.71% | 35.29% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 80.95% | 19.05% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204622579 | A->T | INTERGENIC | None |