Detailed information of SNP:
|
SNP ID:
sf1204656383(Gbrowse)
Chromosome: chr12 Position: 4656383 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1418 | 63.40% | 36.60% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 496 | 9.27% | 90.73% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 334 | 4.79% | 95.21% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204656383 | T->G | INTERGENIC | None |