Detailed information of SNP:
|
SNP ID:
sf1204678918(Gbrowse)
Chromosome: chr12 Position: 4678918 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1383 | 93.06% | 6.94% |
| All Indica | 796 | 99.25% | 0.75% |
| All Japonica | 464 | 83.19% | 16.81% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 374 | 99.47% | 0.53% |
| Indica II | 212 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 308 | 95.78% | 4.22% |
| Tropical Japonica | 91 | 41.76% | 58.24% |
| Japonica Intermediate | 65 | 81.54% | 18.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204678918 | C->T | INTERGENIC | None |