Detailed information of SNP:
|
SNP ID:
sf1204689357(Gbrowse)
Chromosome: chr12 Position: 4689357 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 60.65% | 39.35% |
| All Indica | 799 | 97.25% | 2.75% |
| All Japonica | 497 | 9.66% | 90.34% |
| Aus | 66 | 30.30% | 69.70% |
| Indica I | 375 | 97.87% | 2.13% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.68% | 3.32% |
| Temperate Japonica | 335 | 5.37% | 94.63% |
| Tropical Japonica | 94 | 6.38% | 93.62% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 35.71% | 64.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204689357 | G->A | INTERGENIC | None |