Detailed information of SNP:
|
SNP ID:
sf1204696579(Gbrowse)
Chromosome: chr12 Position: 4696579 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 92.71% | 7.29% |
| All Indica | 798 | 99.37% | 0.63% |
| All Japonica | 492 | 83.94% | 16.06% |
| Aus | 67 | 82.09% | 17.91% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 99.06% | 0.94% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 96.12% | 3.88% |
| Tropical Japonica | 89 | 40.45% | 59.55% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204696579 | C->G | INTERGENIC | None |