Detailed information of SNP:



SNP ID: sf1204722460(Gbrowse)

Chromosome: chr12

Position: 4722460
Major allele: G

Minor allele: T

Reference allele: T

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of T(minor allele)
All1418 63.89% 36.11%
All Indica798 98.12% 1.88%
All Japonica497 9.46% 90.54%
Aus67 79.10% 20.90%
Indica I375 99.20% 0.80%
Indica II213 96.71% 3.29%
Indica Intermediate210 97.62% 2.38%
Temperate Japonica335 5.07% 94.93%
Tropical Japonica94 7.45% 92.55%
Japonica Intermediate68 33.82% 66.18%
Group VI/Aromatic14 7.14% 92.86%
Intermediate42 52.38% 47.62%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf1204722460 T->G INTERGENIC None