Detailed information of SNP:
|
SNP ID:
sf1204726723(Gbrowse)
Chromosome: chr12 Position: 4726723 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 53.50% | 46.50% |
| All Indica | 794 | 90.68% | 9.32% |
| All Japonica | 496 | 0.20% | 99.80% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 372 | 90.05% | 9.95% |
| Indica II | 213 | 92.02% | 7.98% |
| Indica Intermediate | 209 | 90.43% | 9.57% |
| Temperate Japonica | 334 | 0.30% | 99.70% |
| Tropical Japonica | 94 | 0.00% | 100.00% |
| Japonica Intermediate | 68 | 0.00% | 100.00% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204726723 | G->A | INTERGENIC | None |