Detailed information of SNP:
|
SNP ID:
sf1204784468(Gbrowse)
Chromosome: chr12 Position: 4784468 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 61.38% | 38.62% |
| All Indica | 799 | 96.25% | 3.75% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 50.75% | 49.25% |
| Indica I | 375 | 96.00% | 4.00% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 96.21% | 3.79% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 54.76% | 45.24% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204784468 | A->G | INTERGENIC | None |