Detailed information of SNP:
|
SNP ID:
sf1204795415(Gbrowse)
Chromosome: chr12 Position: 4795415 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 58.07% | 41.93% |
| All Indica | 799 | 90.36% | 9.64% |
| All Japonica | 497 | 8.85% | 91.15% |
| Aus | 67 | 52.24% | 47.76% |
| Indica I | 375 | 89.07% | 10.93% |
| Indica II | 213 | 93.43% | 6.57% |
| Indica Intermediate | 211 | 89.57% | 10.43% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 30.88% | 69.12% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 52.38% | 47.62% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204795415 | T->C | INTERGENIC | None |