Detailed information of SNP:
|
SNP ID:
sf1204806684(Gbrowse)
Chromosome: chr12 Position: 4806684 |
Major allele:
C
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1407 | 64.61% | 35.39% |
| All Indica | 799 | 98.12% | 1.88% |
| All Japonica | 485 | 9.48% | 90.52% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 325 | 4.62% | 95.38% |
| Tropical Japonica | 92 | 7.61% | 92.39% |
| Japonica Intermediate | 68 | 35.29% | 64.71% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204806684 | T->C | LOC_Os12g09210(LOC_Os12g09210.1) | UTR_3_PRIME |