Detailed information of SNP:
|
SNP ID:
sf1204809044(Gbrowse)
Chromosome: chr12 Position: 4809044 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 95.20% | 4.80% |
| All Indica | 799 | 99.12% | 0.88% |
| All Japonica | 494 | 92.51% | 7.49% |
| Aus | 67 | 65.67% | 34.33% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 99.05% | 0.95% |
| Temperate Japonica | 334 | 96.11% | 3.89% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 66 | 72.73% | 27.27% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 97.62% | 2.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204809044 | G->A | LOC_Os12g09210(LOC_Os12g09210.1) | UTR_5_PRIME |