Detailed information of SNP:
|
SNP ID:
sf1204815484(Gbrowse)
Chromosome: chr12 Position: 4815484 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 64.20% | 35.80% |
| All Indica | 799 | 98.25% | 1.75% |
| All Japonica | 497 | 9.26% | 90.74% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 99.20% | 0.80% |
| Indica II | 213 | 97.18% | 2.82% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 4.78% | 95.22% |
| Tropical Japonica | 94 | 7.45% | 92.55% |
| Japonica Intermediate | 68 | 33.82% | 66.18% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 42 | 59.52% | 40.48% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf1204815484 | A->G | LOC_Os12g09220(LOC_Os12g09220.1) | UTR_5_PRIME |